SC Model Results Summary
2020-05-08
Year: 2017
Species: WhiteTailedJackrabbit
Metadata Summary:
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 31 | 46 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm1 | dot model | 305.9508 |
| sc.fm2.2 | temp | 306.2525 |
| sc.fm2.1 | snow | 307.2260 |
| sc.fm4.0 | lure + snow + temp | 307.8456 |
| sc.fm2.3 | pass | 308.1183 |
| sc.fm2.0 | lure | 308.2847 |
| sc.fm3.0 | lure + snow | 309.3748 |
| sc.fm4.2 | lure + snow + temp + pass | 309.8123 |
| sc.fm3.1 | lure + pass | 310.2032 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 311.0779 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 311.0822 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean |
|---|---|
| psi.ind | 0.12461 |
| beta.ind[3] | 0.00115 |
| beta.ind[2] | 0.00073 |
| beta.ind[1] | 0.00030 |
| beta.ind[4] | 0.00000 |
| beta.ind[5] | 0.00000 |
| beta.ind[6] | 0.00000 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.12532 |
| beta.ind[5] | 0.00364 |
| beta.ind[4] | 0.00273 |
| beta.ind[3] | 0.00073 |
| beta.ind[2] | 0.00067 |
| beta.ind[1] | 0.00030 |
| beta.ind[6] | 0.00030 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.16829 |
| beta.ind[3] | 0.00176 |
| beta.ind[2] | 0.00079 |
| beta.ind[1] | 0.00061 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N | 794 | 125.847 | 67.179 | 26.00 | 234.00 | 0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| D | 794 | 76.050 | 40.597 |
| n_sites | N_detections | rep_period | model_agg_M | iterations | burnin | thin | state_buffer |
|---|---|---|---|---|---|---|---|
| 31 | 46 | 7 days | 300 | 350000 | 20000 | 20 | 2.5 |
WAIC
Models by WAIC:| model | description | WAIC |
|---|---|---|
| sc.fm1 | dot model | 305.9508 |
| sc.fm2.2 | temp | 306.2525 |
| sc.fm2.1 | snow | 307.2260 |
| sc.fm4.0 | lure + snow + temp | 307.8456 |
| sc.fm2.3 | pass | 308.1183 |
| sc.fm2.0 | lure | 308.2847 |
| sc.fm3.0 | lure + snow | 309.3748 |
| sc.fm4.2 | lure + snow + temp + pass | 309.8123 |
| sc.fm3.1 | lure + pass | 310.2032 |
| sc.fm5.1 | lure + snow + temp + pass + lure * snow | 311.0779 |
| sc.fm5.0 | lure + snow + temp + pass + temp * snow | 311.0822 |
Reversible Jump MCMC:
sc.fm6.0 model: (reverse jump) lure + snow + temp + pass + temp * snow + lure * snow| cov | indicator_mean | |
|---|---|---|
| psi.ind | 0.1.21 | 0.93219 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 775 | 134.433 | 77.742 | 32.00 | 242.00 | 0.00000 |
| D | 775 | 81.239 | 46.980 | 19.34 | 146.24 | 0.00000 |
| sigma | 1294 | 0.307 | 0.266 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 5805 | -1.725 | -1.703 | -2.38 | -1.07 | 0.00096 |
| beta.lam0[1] | 16500 | -0.224 | -0.218 | -0.51 | 0.05 | 0.45881 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 743 | 133.096 | 76.258 | 30.00 | 244.00 | 0.00000 |
| D | 743 | 80.431 | 46.083 | 17.52 | 146.85 | 0.00000 |
| sigma | 1369 | 0.309 | 0.295 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 6018 | -1.702 | -1.648 | -2.37 | -1.06 | 0.00231 |
| beta.lam0[1] | 16500 | -0.270 | -0.274 | -0.54 | -0.01 | 0.25062 |
N
D
sigma
beta0.lam0
beta.lam0[1]
<2461
| cov | indicator_mean |
|---|---|
| psi.ind | 0.12532 |
| beta.ind[5] | 0.00364 |
| beta.ind[4] | 0.00273 |
| beta.ind[3] | 0.00073 |
| beta.ind[2] | 0.00067 |
| beta.ind[1] | 0.00030 |
| beta.ind[6] | 0.00030 |
| cov | indicator_mean |
|---|---|
| psi.ind | 0.16829 |
| beta.ind[3] | 0.00176 |
| beta.ind[2] | 0.00079 |
| beta.ind[1] | 0.00061 |
| beta.ind[4] | 0.00000 |
Model summaries:
sc.fm1 summary:
dot model
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 794 | 125.847 | 67.179 | 26.00 | 234.00 | 0 |
| D | 794 | 76.050 | 40.597 | 15.71 | 141.41 | 0 |
| sigma | 1237 | 0.301 | 0.282 | 0.17 | 0.43 | 0 |
| lam0 | 6303 | 0.254 | 0.198 | 0.09 | 0.40 | 0 |
N
D
sigma
lam0
sc.fm2.0 summary:
lure
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 732 | 136.384 | 68.829 | 35.00 | 254.00 | 0.00000 |
| D | 732 | 82.417 | 41.594 | 21.15 | 153.49 | 0.00000 |
| sigma | 1424 | 0.307 | 0.279 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 5322 | -1.700 | -1.613 | -2.35 | -1.01 | 0.00246 |
| beta.lam0[1] | 16500 | -0.120 | -0.055 | -0.41 | 0.21 | 0.93219 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.1 summary:
snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 775 | 134.433 | 77.742 | 32.00 | 242.00 | 0.00000 |
| D | 775 | 81.239 | 46.980 | 19.34 | 146.24 | 0.00000 |
| sigma | 1294 | 0.307 | 0.266 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 5805 | -1.725 | -1.703 | -2.38 | -1.07 | 0.00096 |
| beta.lam0[1] | 16500 | -0.224 | -0.218 | -0.51 | 0.05 | 0.45881 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.2 summary:
temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 743 | 133.096 | 76.258 | 30.00 | 244.00 | 0.00000 |
| D | 743 | 80.431 | 46.083 | 17.52 | 146.85 | 0.00000 |
| sigma | 1369 | 0.309 | 0.295 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 6018 | -1.702 | -1.648 | -2.37 | -1.06 | 0.00231 |
| beta.lam0[1] | 16500 | -0.270 | -0.274 | -0.54 | -0.01 | 0.25062 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm2.3 summary:
pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 774 | 143.926 | 93.563 | 40.00 | 265.00 | 0.00000 |
| D | 774 | 86.975 | 56.541 | 24.17 | 160.14 | 0.00000 |
| sigma | 1751 | 0.315 | 0.287 | 0.19 | 0.43 | 0.00000 |
| beta0.lam0 | 4360 | -2.102 | -2.076 | -2.94 | -1.26 | 0.00183 |
| beta.lam0[1] | 8551 | 0.927 | 0.789 | -0.09 | 1.91 | 0.32300 |
N
D
sigma
beta0.lam0
beta.lam0[1]
sc.fm3.0 summary:
lure + snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode |
|---|
| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | ||
|---|---|---|---|---|---|---|---|---|
| N | 727 | 153.727 | 91.161 | 47.00 | 276.00 | 0.00000 | ||
| D | 727 | 92.898 | 55.089 | 26.59 | 164.98 | 0.00000 | ||
| sigma | 1836 | 0.315 | 0.291 | 0.19 | 0.43 | 0.00000 | ||
| beta0.lam0 | 3539 | -2.335 | -2.372 | -3.25 | -1.45 | 0.00161 | ||
| beta.lam0[1] | 16500 | -0.188 | -0.146 | -0.55 | 0.17 | 0.88276 | ||
| beta.lam0[2] | 16937 | -0.222 | -0.201 | -0.52 | 0.08 | 0.54659 | style=“text-align:right;”> hdi_89pct_lowerhdi_89pct_upper | bayes_P |
| N | 687 | 138.562 | 78.022 | 32.00 | 252.00 | 0.00000 | ||
| D | 687 | 83.734 | 47.149 | 19.34 | 152.28 | 0.00000 | ||
| sigma | 1294 | 0.305 | 0.266 | 0.18 | 0.43 | 0.00000 | ||
| beta0.lam0 | 4504 | -1.764 | -1.780 | -2.44 | -1.06 | 0.00234 | ||
| beta.lam0[1] | 16500 | -0.102 | -0.025 | -0.41 | 0.21 | 0.98911 | ||
| beta.lam0[2] | 16500 | -0.218 | -0.189 | -0.49 | 0.07 | 0.47639 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm3.1 summary:
lure + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 818 | 142.874 | 81.862 | 37.00 | 255.00 | 0.00000 |
| D | 818 | 86.340 | 49.470 | 21.15 | 152.89 | 0.00000 |
| sigma | 1806 | 0.318 | 0.303 | 0.19 | 0.44 | 0.00000 |
| beta0.lam0 | 3899 | -2.164 | -2.125 | -3.03 | -1.30 | 0.00183 |
| beta.lam0[1] | 16500 | -0.142 | -0.116 | -0.46 | 0.18 | 0.85549 |
| beta.lam0[2] | 9833 | 0.933 | 0.826 | -0.02 | 1.95 | 0.30240 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
sc.fm4.0 summary:
lure + snow + temp
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 764 | 143.286 | 90.827 | 34.00 | 256.00 | 0.00000 |
| D | 764 | 86.588 | 54.887 | 20.55 | 154.70 | 0.00000 |
| sigma | 1474 | 0.303 | 0.267 | 0.18 | 0.43 | 0.00000 |
| beta0.lam0 | 5552 | -1.876 | -1.901 | -2.59 | -1.22 | 0.00074 |
| beta.lam0[1] | 16500 | -0.223 | -0.194 | -0.58 | 0.14 | 0.72331 |
| beta.lam0[2] | 16115 | -0.265 | -0.245 | -0.54 | 0.02 | 0.35072 |
| beta.lam0[3] | 16500 | -0.350 | -0.375 | -0.62 | -0.08 | 0.11490 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
sc.fm4.2 summary:
lure + snow + temp + pass
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 764 | 151.446 | 112.620 | 44.00 | 269.00 | 0.00000 |
| D | 764 | 91.520 | 68.057 | 26.59 | 162.56 | 0.00000 |
| sigma | 1720 | 0.317 | 0.286 | 0.19 | 0.44 | 0.00000 |
| beta0.lam0 | 3657 | -2.357 | -2.312 | -3.25 | -1.51 | 0.00082 |
| beta.lam0[1] | 16500 | -0.251 | -0.191 | -0.63 | 0.12 | 0.65294 |
| beta.lam0[2] | 16500 | -0.271 | -0.251 | -0.55 | 0.02 | 0.33915 |
| beta.lam0[3] | 16500 | -0.346 | -0.341 | -0.61 | -0.07 | 0.11906 |
| beta.lam0[4] | 5113 | 0.930 | 0.866 | -0.04 | 1.86 | 0.26827 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
sc.fm5.0 summary:
lure + snow + temp + pass + temp * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 727 | 153.727 | 91.161 | 47.00 | 276.00 | 0.00000 |
| D | 727 | 92.898 | 55.089 | 26.59 | 164.98 | 0.00000 |
| sigma | 1836 | 0.315 | 0.291 | 0.19 | 0.43 | 0.00000 |
| beta0.lam0 | 3539 | -2.335 | -2.372 | -3.25 | -1.45 | 0.00161 |
| beta.lam0[1] | 16500 | -0.188 | -0.146 | -0.55 | 0.17 | 0.88276 |
| beta.lam0[2] | 16937 | -0.222 | -0.201 | -0.52 | 0.08 | 0.54659 |
| beta.lam0[3] | 16500 | -0.221 | -0.194 | -0.55 | 0.11 | 0.58673 |
| beta.lam0[4] | 10076 | 0.966 | 0.855 | -0.08 | 1.87 | 0.28241 |
| beta.lam0[5] | 16500 | 0.295 | 0.284 | -0.16 | 0.74 | 0.60228 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
sc.fm5.1 summary:
lure + snow + temp + pass + lure * snow
summary table
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.
## Warning: Identical densities found along different segments of the distribution,
## choosing rightmost.| param | n_effective | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P |
|---|---|---|---|---|---|---|
| N | 782 | 145.802 | 101.092 | 38.00 | 260.00 | 0.00000 |
| D | 782 | 88.109 | 61.090 | 22.96 | 157.12 | 0.00000 |
| sigma | 1835 | 0.322 | 0.292 | 0.20 | 0.44 | 0.00000 |
| beta0.lam0 | 3959 | -2.404 | -2.269 | -3.27 | -1.52 | 0.00166 |
| beta.lam0[1] | 16500 | -0.349 | -0.241 | -0.77 | 0.11 | 0.54103 |
| beta.lam0[2] | 16500 | -0.252 | -0.258 | -0.55 | 0.06 | 0.42682 |
| beta.lam0[3] | 17455 | -0.370 | -0.365 | -0.66 | -0.09 | 0.12190 |
| beta.lam0[4] | 8472 | 0.917 | 0.823 | -0.10 | 1.86 | 0.32310 |
| beta.lam0[5] | 16500 | 0.190 | 0.161 | -0.14 | 0.52 | 0.63611 |
N
D
sigma
beta0.lam0
beta.lam0[1]
beta.lam0[2]
beta.lam0[3]
beta.lam0[4]
beta.lam0[5]
